Legacy icons in XFCE

I finally upgraded to Slackware64 14.2. I made a clean install and set up the system to be -multilib. I use XFCE and I wanted to use my favourite GNOME Colors icon theme. It is not available at SBo for Slackware 14.2 anymore and it depends on gnome-icon-theme that was removed from Slackware in favour of adwaita-icon-theme. Read the rest of this entry »

Heroes III in a Windows VM

Over a year ago, I wrote a post about playing Heroes III natively in Linux thanks to the VCMI project. Unfortunatelly, the VCMI engine is not yet stable enough for me to consider the game playable. It turned out to crash way too often, and sometimes the AI players behave in a pretty weird way.

I got tired of it and looked for an alternative approach, at least until VCMI gets more stable. Read the rest of this entry »

Converting sequences by squizz

Sometimes I need to have a DNA or amino acid sequence (or an alignment) in several different formats. A neat little program that can convert between different sequence formats is squizz. Its primary function is to serve as a sequence format file checker, but can do some conversions. Read the rest of this entry »

Geneconv: detect gene conversion

Geneconv is a program for detecting gene conversion between aligned DNA sequences. It can also search for gene conversion fragments from outside the alignment. The output results are ranked by P-values and presented in a spreadsheet manner. The data are valuable for bioinformatics studies and papers that deal with evolution.
Read the rest of this entry »