Cytoscape and JAVA 11

I use Cytoscape for network analyses. It’s a JAVA program, that seems to quite picky about the version and flavour of JAVA. At the moment, Cytoscape 3.9.1 requires JAVA 11, specifically AdoptOpenJDK Hotspot. The project has recently moved to Adoptium, that offer prebuilt OpenJDK binaries.
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CRUX post-install cheatsheet

The crux.nu website actually provides all the information you need in order to have your CRUX installation up and running. Especially useful reads are the handbook, the wiki and the prt-get manual together with prt-utils list for package management.

Here, I am going to outline a few steps to do immediately after install for my future reference.
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