Tag Archives: clean

Cleaning up with sed 2

Posted on 2017-07-08 by

I have a list of nucleotide sequences in fasta format, obtained from NCBI. I want to clean the sequences names, leaving only the accession numbers. Additionally, I want to extract the accession numbers to a separate list. I am not … Continue reading →

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Cleaning up with sed

Posted on 2017-03-31 by

I needed to clean up some plain text files from data and characters I did not want. To be more precise, I have a phylogenetic tree, obtained from the TimeTree web-site. Species presented there are mainly birds, several reptiles and … Continue reading →

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